rs238068220 SNP Detail

Summary

• ID
  rs238068220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34153812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGCGGAA GAAGAGGACG
  CTTTGCTGCA GGAACGCAGG TCCGAGCGCA GCGGCAGCTT TGCGGGAGCT CAGGGGCGGG
  GTAGGAGGCG TCCATCACTC TCCGACCTCC TGGCGAGCCT CAAGCCCCTT ACGCAGCGCC
  TCTCTGAGCA CCCTGTCCCT GCTGTCGTTC ACTGAGGACC ACTTCCTCGC ACGCTCTCCG
  Y
  TCGGCCCCTC CGTGCTCCCG CGGTCCGCCA GCCACGCAGC CCAAGTGTGC CATCGGGCGG
  GCGCAGAGGC GGCGTCTGCT CCCACCCCCG AGATCACATG GTGACCCTCG GCAGCCAATG
  CAGTGGACGC TAGGACCCTG CGGGACCCCG GGCGCCGCGA CTGCACCGGC GCCGCTGCAT
  TATAAATACT TCTCCAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364490763	MGP_WTSI_5_34339117	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238068220					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364490763	MGP_WTSI_5_34339117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34153812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15746	CpG island 15746	within coordinates
Nat8l	N-acetyltransferase 8-like	within coordinates
Rr609648	regulatory region 609648	1615 bp distal
Rr609649	regulatory region 609649	474 bp distal
Tssr1458	transcription start site region 1458	315 bp upstream
Tssr45846	transcription start site region 45846	438 bp downstream
Tssr45847	transcription start site region 45847	407 bp downstream
Tssr45848	transcription start site region 45848	357 bp downstream
Tssr45849	transcription start site region 45849	331 bp downstream
Tssr45850	transcription start site region 45850	44 bp downstream
Tssr45851	transcription start site region 45851	117 bp upstream
Tssr45852	transcription start site region 45852	141 bp upstream
Tssr45853	transcription start site region 45853	171 bp upstream
Tssr45854	transcription start site region 45854	230 bp upstream
Tssr45855	transcription start site region 45855	263 bp upstream
Tssr45856	transcription start site region 45856	280 bp upstream
Tssr45857	transcription start site region 45857	302 bp upstream
Tssr50625	transcription start site region 50625	68 bp downstream
Tssr50626	transcription start site region 50626	1113 bp downstream