rs238076136 SNP Detail

Summary

• ID
  rs238076136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAAAAA TATTTGTTTG
  TTTAATGTAT GTAAGTATAC TGTTGCTATC TTCAGACACA CCAGAAGAGG GCATCCAATC
  CCATTACAGA TGGTTGTGAG CCACCATGTG GTTGCTGGGA ATTGAACTCA GGACCTCTGG
  ACTATTGGTA TGTCTGAAGA CAGCTACTGT GTACTCATAT AACATAAATA AATCTTTTAA
  R
  AAACAAAAGA ACAAGAACAA ATCAGGAACA AGCATATTTT CTGAAATTGG GCCTTGTGGT
  ATATGCCTAT TAATCCCAGT ACCAGAGGGT TTGGAGCAGG AATATTAGAA ACTCATCAGA
  CACCATTCTC TTAGCTATGT AATGAGTTGG AGGCCAGCCT CAGGTACATG AGACCTATAT
  CAAAACAAAC CATAGGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743415	MGP_WTSI_7_19760074	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238076136					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743415	MGP_WTSI_7_19760074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1531 bp distal
Cpgi18450	CpG island 18450	1569 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1696 bp upstream
Gm71808	predicted gene, 71808	1374 bp downstream
Rr155270	regulatory region 155270	1250 bp distal
Rr155271	regulatory region 155271	50 bp distal
Rr167137	regulatory region 167137	1449 bp distal
Rr167138	regulatory region 167138	750 bp proximal
Tssr64790	transcription start site region 64790	1691 bp upstream
Tssr64791	transcription start site region 64791	1721 bp upstream
Tssr64792	transcription start site region 64792	1758 bp upstream
Tssr64793	transcription start site region 64793	1788 bp upstream
Tssr64794	transcription start site region 64794	1923 bp upstream