rs238078422 SNP Detail

Summary

• ID
  rs238078422
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82068832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTCAGG ACCGTGACAC
  GCAGAAGTCA CCAGAACGTG GGACAGCGCT TCACACTCCT CTAACGCCCA ATCCTCCTCC
  CAGGGACAGT CAGTGGGGAC TAGTCTGAGC TACCTTCTCA CATCCTTTTA CATTTCCGCC
  TTCTGCAGTC TCTTCTCCTG TCCGGGTCGC ATTGTGATTG CCTTGCCCCC CCCCCCCCCC
  S
  CCCCGCGCGC TTCGCCCCTG TGATCCCGCA CCCCAGGATT GGCAGCTGAC CCCAGAGACA
  GCAGAGTCTG AGTGGTGGGT GTCAGTAAAC AGAAGCAGCG TGTTGTGGTC ATTTCGAGCT
  GTGCGGTCGG GCCACCAACT CCATCTGTGG CAGGGAGGCG AGCTGCACCA GTTGCGAGAC
  TGCTGCTGTT CCTCTTTGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322727467	CHEV_8_83866102	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238078422					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82068832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	within coordinates
Gm51582	predicted gene, 51582	within coordinates
Inpp4b	inositol polyphosphate-4-phosphatase, type II	353 bp upstream
Tssr78167	transcription start site region 78167	298 bp upstream
Tssr78168	transcription start site region 78168	321 bp upstream
Tssr78169	transcription start site region 78169	358 bp upstream
Tssr78170	transcription start site region 78170	404 bp upstream
Tssr78171	transcription start site region 78171	498 bp upstream