rs238080153 SNP Detail

Summary

• ID
  rs238080153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118576114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACGGAGCC TGCCCCTCCC TGCCACCTCC
  CGGTTCCGCA CTCCCTCCCG CAAAGTGCCT TTCCCCCTTT AAAGAAGCTC CTGTCGCCCC
  TTTAAGGCCC AGCCTCCCTT AACTCTCTCT TAACTGGGCG TCCCCCACGG GGCCCACGAT
  Y
  CCCCGCCGCA GCCGCCTCCC AGCGCGGCAC TTCCGGGCCC CTACATCGCC CTTTTAAGGG
  GCAgcccccc ggcagcgcgc ggccccgccc cctgcaccgg cgcgccccgc gggggagccg
  ggcTAGAGCC GGAGCGCGCG GTCCGCGCGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320471580	CHEV_2_118571369	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238080153					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118576114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12091	CpG island 12091	within coordinates
Inafm2	InaF motif containing 2	125 bp upstream
Rr397215	regulatory region 397215	within coordinates
Rr563315	regulatory region 563315	1792 bp distal
Rr563316	regulatory region 563316	within coordinates
Rr563317	regulatory region 563317	113 bp distal
Rr563318	regulatory region 563318	701 bp proximal
Tssr19569	transcription start site region 19569	105 bp upstream
Tssr19570	transcription start site region 19570	144 bp upstream
Tssr19571	transcription start site region 19571	1352 bp upstream
Tssr19572	transcription start site region 19572	1630 bp upstream