rs238085934 SNP Detail

Summary

• ID
  rs238085934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCCTTTGG CTCTAAACTG CCTATGATTT
  CCTAAGCAGA AGGGAGGAAA GGAATGCCAG GAGAGAAAAA GTTGAGCCAT TGTCAAaaag
  gaagaaagaa agaaagaaag gaaagaagaa agaaagaaat gaaaTGAGCG TGTGAAGCCA
  R
  CTGTGTTTCT ATCTACCCAT TCCTCAATTT CTAGGCTGCA CGGACACCTT GGGGGATATG
  GATTATTCCA TTTTAGACCC CAGAGACCTC TGTTCAGCCT GTGGGGCATC CCTCTGTAAC
  TGCAGCGCCA TGGCAACCAC CAAGCCTGTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322281156	CHEV_7_87486636	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238085934					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	1252 bp distal
Cpgi19332	CpG island 19332	1133 bp proximal
Hddc3	HD domain containing 3	1354 bp upstream
Rr400403	regulatory region 400403	1349 bp downstream
Rr400404	regulatory region 400404	1193 bp upstream
Rr649870	regulatory region 649870	1041 bp distal
Rr649871	regulatory region 649871	1382 bp distal
Rr649872	regulatory region 649872	713 bp distal
Rr649873	regulatory region 649873	873 bp proximal
Rr649874	regulatory region 649874	1317 bp proximal
Tssr67435	transcription start site region 67435	1341 bp upstream
Tssr67436	transcription start site region 67436	1415 bp upstream
Tssr73215	transcription start site region 73215	1740 bp upstream
Tssr73216	transcription start site region 73216	1600 bp upstream
Tssr73217	transcription start site region 73217	1540 bp upstream
Tssr73218	transcription start site region 73218	1519 bp upstream
Unc45a	unc-45 myosin chaperone A	750 bp upstream