rs238090181 SNP Detail

Summary

• ID
  rs238090181
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129853974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACGTTC CTGGGGCCCG
  GAAGGATGCG ATCCACCAGG TACCAAGGTT GCTCCCAGCC CTCCATAGAC CAAGCACTCT
  GCGGCCCCGG CGTCCTGTGA GCTCTCGGGG CCCAAAGGGT CGCCCGGGGC AACCGGCCGG
  CGCCCAGGTC GGAGCAGACG GTCGTGCGGG CCGCCGACCC CTCCACTCCG GCCTCGGTCC
  K
  CGCGGGAGGG CAGGCCTGGA TGGCAGGCGG CCGGCGGCCC CGCCCTGCCG GCCCTTCGGT
  CGCTCCCCTC GCCGCATCGC GGCCTCCAGG CTCCACCGCG GCCTCGGGGC CCCACCGCGG
  CCTCCCCGGT CCGGCCCTGC CCTGCCCGCC CCCAGCCACC GCGCAGGCCG CCCGCCCGCC
  CGCCCGCTCT CCCTCCCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359703463	MGP_WTSI_3_129763243	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238090181					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359703463	MGP_WTSI_3_129763243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129853974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	within coordinates
Sec24b	SEC24 homolog B, COPII coat complex component	within coordinates
Tssr31665	transcription start site region 31665	442 bp upstream
Tssr35653	transcription start site region 35653	348 bp downstream
Tssr35654	transcription start site region 35654	410 bp downstream
Tssr35655	transcription start site region 35655	485 bp downstream
Tssr35656	transcription start site region 35656	513 bp downstream
Tssr35657	transcription start site region 35657	525 bp downstream
Tssr35658	transcription start site region 35658	694 bp downstream
Tssr35659	transcription start site region 35659	1160 bp downstream
Tssr35660	transcription start site region 35660	1242 bp downstream