rs238091380 SNP Detail

Summary

• ID
  rs238091380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10610571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCCATG GGGGAAACTG
  AGGCACAGAT AAGCGCTTCT TAACTTCTTA ACTTCCTATC TTGGATCTTA GGCTAACCAG
  GTCTGCCTAC CTCTACTTTC CTGAGGCATA TCTGAGACAT TTGTTGATTC TCAACTCTAC
  CTTGCTGATG AATAGTCCAG AATCAGAAGG GTGTGGGAGT GGGGCAGAGG GACATAGTCC
  Y
  TCATAATTCT TGAATCTGAG CCTGTCACAG GACAATGAGC AGTTAGTAGT GCTAGCTTAA
  ATAAGATCTA AACTAGTTGC AAAAAGTGCA CAACCGCACA ACCTAGTAAT TTCAGTCTAT
  GGTAGAGTGC AGAGTACACA GTAGATGGCT ACTCTTGCTG GAAAATAATA GTTTGATTTG
  TTACTGTGGC CACTGGGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395386275	MGP_WTSI_16_10792800	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238091380					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395386275	MGP_WTSI_16_10792800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10610571 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	602 bp upstream
Prm3	protamine 3	1793 bp upstream
Tssr137053	transcription start site region 137053	1259 bp downstream
Tssr137054	transcription start site region 137054	1116 bp downstream
Tssr137055	transcription start site region 137055	889 bp downstream
Tssr137056	transcription start site region 137056	875 bp downstream
Tssr139950	transcription start site region 139950	1788 bp upstream
Tssr139951	transcription start site region 139951	1757 bp upstream
Tssr139952	transcription start site region 139952	1224 bp upstream
Tssr139953	transcription start site region 139953	1120 bp upstream
Tssr139954	transcription start site region 139954	1067 bp upstream
Tssr139955	transcription start site region 139955	968 bp upstream
Tssr139956	transcription start site region 139956	600 bp upstream
Tssr139957	transcription start site region 139957	426 bp downstream