rs238097833 SNP Detail

Summary

• ID
  rs238097833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:108145320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGG CCGAGCACCG GACCTCGGAG
  Y
  CCGCACGCTC GGCCTCACCT CCTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324152848	CHEV_12_109417271	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238097833					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108145320 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccnk	cyclin K			518 bp upstream
Cpgi5076	CpG island 5076			within coordinates
Rr403488	regulatory region 403488			268 bp upstream
Rr472439	regulatory region 472439			within coordinates
Rr472440	regulatory region 472440			145 bp proximal
Rr472441	regulatory region 472441			688 bp proximal
Rr472442	regulatory region 472442			842 bp proximal
Setd3	SET domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr114948	transcription start site region 114948			564 bp downstream
Tssr114949	transcription start site region 114949			201 bp downstream
Tssr114950	transcription start site region 114950			72 bp upstream
Tssr114951	transcription start site region 114951			75 bp upstream
Tssr114952	transcription start site region 114952			482 bp upstream
Tssr114953	transcription start site region 114953			732 bp upstream
Tssr114954	transcription start site region 114954			847 bp upstream
Tssr117676	transcription start site region 117676			149 bp downstream
Tssr117677	transcription start site region 117677			176 bp downstream