rs238097894 SNP Detail

Summary

• ID
  rs238097894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3370567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG CTGTGAAAAT TCCCTGTCAC
  R
  TATATTAGGT GGGATAGTTA GGGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325714997	CHEV_19_3320567	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238097894					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3370567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10363	CpG island 10363	1917 bp proximal
Cpt1a	carnitine palmitoyltransferase 1a, liver	1767 bp upstream
Gm58963	predicted gene, 58963	1574 bp downstream
Rr542374	regulatory region 542374	1888 bp distal
Rr542375	regulatory region 542375	within coordinates
Rr542376	regulatory region 542376	444 bp proximal
Rr542377	regulatory region 542377	727 bp proximal
Rr542378	regulatory region 542378	1696 bp proximal
Tssr154175	transcription start site region 154175	1725 bp upstream