rs238099420 SNP Detail

Summary

• ID
  rs238099420
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26493035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACATATA CATATATCCC
  TGAGCATTAG ACCTCATCTG GACATACTCA CATGAGGCCT GCGTGATGGT TCTTTGTCTA
  ATAATAGCTT ATGAAACAAC ATCAATCCAT CAAGAGGGCA GTCCATGAGC TGAGTTACTG
  CGGTAAGGAG CTAACTGCTG CTGGGTGTGA TTGGTCGCCT GTTTATCTAT GCAACCATTA
  S
  ACTCCAAACT CCAAACAGAT CGAAACCTGG GACCTTTTTT TTTTTTTTCA AATAACACCA
  TGAAGCGTCC CTCTTACAAA AACACAGCCC ATGATTTTAT CATTGAACAC ATTATAACAG
  AGACACCAAA GGCTGTAAAA TCAGTGTGAG ATGTCCTAGC CTCTGAAGTT CTTGAGTAAA
  ACCCCCTTCA CAGCATTACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360802	MGP_WTSI_12_27127901	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238099420					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360802	MGP_WTSI_12_27127901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26493035 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	1923 bp distal
Rr464136	regulatory region 464136	1086 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	705 bp upstream
Tssr112999	transcription start site region 112999	752 bp upstream
Tssr113000	transcription start site region 113000	876 bp upstream
Tssr113001	transcription start site region 113001	1350 bp upstream
Tssr113002	transcription start site region 113002	1374 bp upstream
Tssr113003	transcription start site region 113003	1449 bp upstream
Tssr113004	transcription start site region 113004	1509 bp upstream
Tssr113005	transcription start site region 113005	1535 bp upstream
Tssr113006	transcription start site region 113006	1898 bp upstream
Tssr113007	transcription start site region 113007	1982 bp upstream
Tssr115902	transcription start site region 115902	166 bp upstream
Tssr115903	transcription start site region 115903	153 bp downstream
Tssr115904	transcription start site region 115904	170 bp downstream
Tssr115905	transcription start site region 115905	475 bp downstream
Tssr115906	transcription start site region 115906	603 bp downstream
Tssr115907	transcription start site region 115907	658 bp downstream
Tssr115908	transcription start site region 115908	698 bp downstream
Tssr115909	transcription start site region 115909	784 bp downstream
Tssr115910	transcription start site region 115910	836 bp downstream
Tssr115911	transcription start site region 115911	886 bp downstream
Tssr115912	transcription start site region 115912	900 bp downstream
Tssr115913	transcription start site region 115913	935 bp downstream
Tssr115914	transcription start site region 115914	987 bp downstream
Tssr115915	transcription start site region 115915	1016 bp downstream
Tssr115916	transcription start site region 115916	1073 bp downstream
Tssr115917	transcription start site region 115917	1119 bp downstream
Tssr115918	transcription start site region 115918	1138 bp downstream
Tssr115919	transcription start site region 115919	1165 bp downstream
Tssr115920	transcription start site region 115920	1192 bp downstream
Tssr115921	transcription start site region 115921	1497 bp downstream
Tssr115922	transcription start site region 115922	1593 bp downstream
Tssr115923	transcription start site region 115923	1676 bp downstream
Tssr115924	transcription start site region 115924	1747 bp downstream
Tssr115925	transcription start site region 115925	1762 bp downstream