rs238100576 SNP Detail

Summary

• ID
  rs238100576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78076994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGACTA GGAGCAGCTC
  ATAAACGCCG CAGGCCAACT TCTCATGACG ATTTTAGGAG TAGGGAAGCT TTGGGGGGTG
  GGGAGGGGAT CTAAACTGTA AGACGTCACA CTCGCCAGGA TGTTATGTTC AGACTGTGCC
  ACGGCTCAGC CCCCATCTTG TGTGGCGTGT CTTGAGGTTG GGACCTCTGT TGGACAGAGG
  Y
  TGTCCCATTG AGAGGAATGT TTACAGCAGT TCTACAAATA GCAAAGCTCG TCTGGAGACA
  GAAGCATACA GAGGATCCAC TTGCTTCCAT CTCTGTGTGA CGCAGCCACC TCCTCTCCTG
  GTTACCTTAC AGGCAAAAGG AAGAGTCACG AGGCCAGTAG CCAACCTCAA CCGATGGCAG
  AGCCACTCGC ATGCTCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323015490	CHEV_9_78017519	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238100576					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78076994 () rs orientation: forward

Symbol	Name	Function Class
Cilk1	ciliogenesis associated kinase 1	within coordinates
Rr683495	regulatory region 683495	619 bp distal
Tssr86265	transcription start site region 86265	879 bp downstream