rs238104538 SNP Detail

Summary

• ID
  rs238104538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATTTTA GAGAAAGTTA
  AGGAATTTTC AGTATTAAAA AAAACAACAT TATTTCATGT ATAGACTTTT AAATTAAATT
  CCAGTGTGAT TCTTTGATGG AGACCAGCTA GTTGGGAGGC TAAGGCAGGA GAATTCCTGG
  GATCAGATGT TCAAGACCAA TATGAGCAAT TCAGCAAGAT CCCCATCTCA AAAACAGAAA
  R
  TTGTCTTTCA AGGGAAATAG TACTCTAACT TTCAAAGCGT AATCACAGAA CACACACACA
  CACACACACA CACACACACA CACATTTTTA AAATCTATTG TTTGAGTTTA GAAACAGTGT
  ATAGCAGGTT AGTAAAATGT TTTCTTTTTT GGTGTAGAGG GTAATGAGGC TTCCTGTGAC
  TTTAGACTTA ACTCTCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895798	CHEV_3_116296739	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238104538					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	655 bp proximal
Rr397965	regulatory region 397965	942 bp upstream
Rr583746	regulatory region 583746	629 bp proximal
Rr583747	regulatory region 583747	926 bp proximal
Rr583748	regulatory region 583748	1007 bp proximal
Rr583749	regulatory region 583749	1200 bp proximal
Rr583750	regulatory region 583750	1368 bp proximal
Sass6	SAS-6 centriolar assembly protein	1161 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1138 bp upstream
Tssr35316	transcription start site region 35316	995 bp downstream
Tssr35317	transcription start site region 35317	1027 bp downstream