rs238112738 SNP Detail

Summary

• ID
  rs238112738
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTACCTA ATATGGATGC
  TGGGAGTTAA ACTCGGGTCC TCTGGAAGAG CAGCAAGTGC TCTTAGCCAC TGAGCCATTT
  CTGTAGGTCC TGGTATGTCT CTCTCTCCTC CTTCCTGGGC TCCATCCATA CTAGCCTTCT
  CCTTGCTAAG GACTAAGCCA AACTCTATCT TGGGACCTTT TATTTTTATT TTTTATTATT
  W
  TTATATTTTT ATATATATAT TTTTTTTTGC CCAGAAACCA TTCAGCTTTG GGTATAAATA
  CTTCTTCCCT TTTTTCTTCT TTTTTTCCTT TTTAAAAATA TTTGTTTGTT TAATGTATGT
  AAGTATACTG TTGCTATCTT CAGACACACC AGAAGAGGGC ATCCAATCCC ATTACAGATG
  GTTGTGAGCC ACCATGTGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743398	MGP_WTSI_7_19759785	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238112738					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743398	MGP_WTSI_7_19759785	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1242 bp distal
Cpgi18450	CpG island 18450	1858 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1985 bp upstream
Gm71808	predicted gene, 71808	1663 bp downstream
Rr155270	regulatory region 155270	961 bp distal
Rr155271	regulatory region 155271	40 bp proximal
Rr167137	regulatory region 167137	1160 bp distal
Rr167138	regulatory region 167138	1039 bp proximal
Tssr64790	transcription start site region 64790	1980 bp upstream