rs238117406 SNP Detail

Summary

• ID
  rs238117406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133853115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATACCTAG GCTCCAGTAT
  CTCACAGATG CCCTTTCTGG GCCGGCCTTC CTGCTTCATT TCTTCCCGTA CCAGCCATGT
  GCCCCAACAG CTTTCTCTGT TGGCATTGTC TGGGGATTCT TGGAGAAAAC CAAGGTCACT
  GTCCTGGCAT TGAAGACCCA TTTTGTGACA CTACCCTCTC TATCTGACTT TTCCTTCCTG
  Y
  CCGCCTGATT TGCTTCCTTG CTTCAAGAGC TGTCAACGGC TGGCAGTTTC CCAACTAGAC
  CCCTCCTTTC ATATTCCTGT GGGTCAGGGT GATCATACCG TAGGGAATGT CCTCAATTCT
  GTTCCCTTTC AGATGACTGC AGGCTAGGTT AGGGCCCCAA GCCTGGCCAC CATCTGGGCG
  GGCTTGTTTC CCACGCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363332231	MGP_WTSI_4_133681719	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238117406					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363332231	MGP_WTSI_4_133681719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133853115 () rs orientation: forward

Symbol	Name	Function Class
Rr367739	regulatory region 367739	1359 bp downstream
Rr601571	regulatory region 601571	1066 bp distal
Rr601572	regulatory region 601572	1735 bp distal
Rr601573	regulatory region 601573	1669 bp distal
Rr601574	regulatory region 601574	1186 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1602 bp downstream
Tssr39534	transcription start site region 39534	1246 bp downstream
Tssr39535	transcription start site region 39535	1731 bp upstream
Tssr39536	transcription start site region 39536	1814 bp upstream
Tssr43866	transcription start site region 43866	1823 bp downstream
Tssr43867	transcription start site region 43867	1883 bp downstream
Tssr43868	transcription start site region 43868	1919 bp downstream
Tssr43869	transcription start site region 43869	1994 bp downstream
Ubxn11	UBX domain protein 11	within coordinates