rs238123944 SNP Detail

Summary

• ID
  rs238123944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:87751393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAAGGA GAAGGAAAGG
  TGAGCCAAAG ACACACCCAG AAGGGGAACA GGAGGAGGTA ACGGAGGCAA CTCGGAAAAT
  CAGAGGTCCC AGAGAAAAAA GACTGGGCTA GGAACTGTGA GCAAGCAGGC AAAGAGGGAC
  ATGCGGGAAC AGGGATGAAG GACGTGCGGG AACAGGGATG AAGAAGGAGC AGACAGGAGC
  Y
  CAGGAAAGCC GCAGAGGAGC TGAAGCAAGG CAGTCCTCAC TAAGCTAGAT AATGTCTGTG
  ACGGAAGTAA GAAAGTCCTC CTCTGGGATA CGGCACTTAC ACATGGGAAG AATGGTACGG
  GGAAGTGTAA CACCTCAGAA AGTGACAAGT GACCAGGATG GAACATCAAC AACAATAACA
  ACCATTAAAA ACATGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381166142	MGP_WTSI_10_87378276	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238123944					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381166142	MGP_WTSI_10_87378276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87751393 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	within coordinates
Tssr95088	transcription start site region 95088	1909 bp downstream
Tssr95089	transcription start site region 95089	1892 bp downstream
Tssr95090	transcription start site region 95090	1869 bp downstream
Tssr95091	transcription start site region 95091	1847 bp downstream
Tssr95092	transcription start site region 95092	1829 bp downstream
Tssr95093	transcription start site region 95093	1795 bp downstream
Tssr95094	transcription start site region 95094	1770 bp downstream
Tssr95095	transcription start site region 95095	1762 bp downstream
Tssr95096	transcription start site region 95096	1144 bp downstream
Tssr95097	transcription start site region 95097	1118 bp downstream
Tssr95098	transcription start site region 95098	992 bp downstream
Tssr95099	transcription start site region 95099	218 bp downstream
Tssr95100	transcription start site region 95100	770 bp upstream
Tssr95101	transcription start site region 95101	827 bp upstream
Tssr95102	transcription start site region 95102	861 bp upstream
Tssr95103	transcription start site region 95103	896 bp upstream
Tssr95104	transcription start site region 95104	945 bp upstream
Tssr98816	transcription start site region 98816	177 bp upstream