rs238127928 SNP Detail

Summary

• ID
  rs238127928
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86412348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACACCGT CATTCCCATA
  CTACTATTGA GATCCCCCGC TGAGCGCGGT CAGTCTGAGC TGTAGTGCTG CAGGTGCCAG
  AGGGTCGTTC ATCCCCACAG CTTGCATGGC TGTTGTCAGC ACAGACCGGG CAGCAGCGAC
  CTAGGAACCA GCGCGCCAGC CATCCTAGTG CTTCTGGAAA GGGGTTGGAG GAGGTGCTGT
  M
  CTGACAGGGG AAGGAGGACT CCCAGATGCT GCCTTCTCCA GCCCCCTCCC CGCCCCCCTC
  ACCAACTCCA CGGCGCTGCC TCTTCGTGTT TACTGTGATT TCGCATTCAC CTATCCGTAA
  TTTTCCGAAT TGGGGGCTCT TCCTGCTGTT TTCCAGCAAC TCCTTTCTCC TGTGAGTTTC
  ACCCGCCCAG CGCGCGAGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401532341	MGP_WTSI_18_86563615	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238127928					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401532341	MGP_WTSI_18_86563615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86412348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	within coordinates
Cpgi10353	CpG island 10353	578 bp proximal
Gm54041	predicted gene, 54041	448 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	729 bp upstream
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	549 bp upstream
Tssr152243	transcription start site region 152243	570 bp upstream
Tssr152244	transcription start site region 152244	587 bp upstream
Tssr152245	transcription start site region 152245	695 bp upstream
Tssr152246	transcription start site region 152246	729 bp upstream
Tssr152247	transcription start site region 152247	779 bp upstream
Tssr152248	transcription start site region 152248	961 bp upstream
Tssr152249	transcription start site region 152249	1052 bp upstream
Tssr152250	transcription start site region 152250	1323 bp upstream