rs238130059 SNP Detail

Summary

• ID
  rs238130059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132901470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTCCC ATTCTCTCTG
  TCTTTTGTTG TTGTTGTTGT TGTTGTTTTG TTTGTTTTTT GTTTTTTTCG AGACAGGGTT
  TCTCTGTGTA GCCCTGGCTG TCCTGAAACT CACGCTGTAC ACCAGGCTGG CCTCGAACTC
  AGAAATCTGC CTGCCTCTGC CTCCCGAGTG CTGGGATTAA AGGCGTGCGC CACCACGCCC
  R
  GCCTTAGACT CTTTACACCA TGTTGTAGAT TCACTAATCA CAGTGTGCTG TTAAGTGTAG
  CTGTGCATCG AGTACCTAGT GCTGTTTGCT TTAAGTAGAA GAGTTAAGCT GGAAAGTCTG
  GAGGGAGGGA GTTAGTGTTA AAAACCTGTG GGGTCAAAGG AGGATCCTAG CAGAGAAATG
  GAATGGGAGT CATTTCCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363309927	MGP_WTSI_4_132730074	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238130059					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363309927	MGP_WTSI_4_132730074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132901470 () rs orientation: forward

Symbol	Name	Function Class
Gm69072	predicted gene, 69072	within coordinates
Rr367728	regulatory region 367728	147 bp upstream
Rr601217	regulatory region 601217	10 bp proximal
Tssr1326	transcription start site region 1326	1466 bp downstream
Tssr39456	transcription start site region 39456	312 bp upstream
Tssr39457	transcription start site region 39457	366 bp upstream
Tssr39458	transcription start site region 39458	380 bp upstream
Tssr39459	transcription start site region 39459	1855 bp upstream
Wasf2	WASP family, member 2	within coordinates