rs238131893 SNP Detail

Summary

• ID
  rs238131893
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80642889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTCGCTT GGTTCGTGCT
  CTGCGGGGAC CTCTGACCCA GGCTTCGAAC ACGCAACTGG CCCTGGACCC TGGTGCGCTG
  GCCAGCTTCC CACAGGGCCT GGTCAACCTG TCAGACCCCG CAGCACTGGG ACGCCTGCTC
  GACTGGGAGG AACCCCTATT ACTGCTGCTG TCACCCGCTG CGGCCACGGA GAGGGAACCT
  W
  TGCCGCTGCA CGGCCCCGCT TCTGCTCCCT GGGCAGCGGG CCTGCAACGC AGGGTGGCAG
  TGGAGCTGCA GGCGGCAGCC TCAGAGCTGC GGGACCTCCC GGGTCTGCCA CCCACAGCTC
  CCCCGCTGCT GGCGCGCCTG CTAGCGCTGT GTCCCAACGA CTCCCGCAGC TCCGGGGACC
  CGCTGCGCGC GCTGCTGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025318	MGP_WTSI_10_80269800	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238131893					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025318	MGP_WTSI_10_80269800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80642889 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	Coding-NonSynonymous
Cpgi1909	CpG island 1909	within coordinates
Cpgi1910	CpG island 1910	1112 bp proximal
Jsrp1	junctional sarcoplasmic reticulum protein 1	1441 bp downstream
Rr366747	regulatory region 366747	1773 bp downstream
Rr435398	regulatory region 435398	973 bp distal
Rr435399	regulatory region 435399	43 bp proximal
Tssr94624	transcription start site region 94624	1806 bp downstream
Tssr94625	transcription start site region 94625	914 bp downstream
Tssr94626	transcription start site region 94626	645 bp downstream
Tssr94627	transcription start site region 94627	215 bp downstream
Tssr94628	transcription start site region 94628	620 bp upstream
Tssr98516	transcription start site region 98516	578 bp downstream