rs238136500 SNP Detail

Summary

• ID
  rs238136500
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11889867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTCACC CCAGGGAGCA
  GTAGCTCCCA GGATAATTAA TTTCCTTCAT ATTATGCAGC CACCAGCTTT TATTTCTGTA
  AAAGTTGCCA TGTTTGCAAG AGCTGCTTCT TATACACATC CTCTTGGTTA TTAAATGCCA
  ACCACATTTG TTTACAAATA AAACCAAGTT AATGAAATAC TGCATCTACA TTAGCAAGAG
  M
  TGAGAGCACT GCGGCCTCCG CAGGCTCCAG AGCCTTGTGC TGGCCTTCAG TGGTGTACCT
  CAGGGAGGGT CCCCACAGAG CATTGCAGTT AGAAAGGGGA CCATCTCCAG CAGCTCACTT
  CCCAGCCCTG ACCTACTTGG GATTCTTGCA ACACCTGGAA AATACTGAAA CATATGGCAG
  TTTCCAGCAA GGAGCAAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494108	CHEV_8_11839867	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238136500					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11889867 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	1364 bp proximal
Tex29	testis expressed 29	621 bp upstream
Tssr76253	transcription start site region 76253	634 bp upstream
Tssr76254	transcription start site region 76254	647 bp upstream
Tssr76255	transcription start site region 76255	701 bp upstream