rs238138203 SNP Detail

Summary

• ID
  rs238138203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142131841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTCTGG CTCCCCATTC
  CTCTCCAACC CTAGCTCAGG CCCTTCAGCT TCACTCCGAT GTTTTCCAGC CTTTGCGATG
  CCTTTGCTCT GCCTGAGCTA GCCCCTCAGT CCTTCAACAT TCCTGCCAGA CTCCAGATGC
  CGAGGTGCTC CTCGGACCCC ACGACTCTCC TCCAGCTCTC CCATCTTCCC CAGTTTCCCC
  R
  ATACCCCCCA CCCCCACCCC CCACCCCCCT CCCACACCCG GTGCTTCGGG CCCTCTAGCC
  CGGGCTTTTT CTAACTGGAG TGGCTCCGCC CAGAATTCCC GCCCCTACTC TGTCAACCAA
  TCAGTACATG GCCCCGCCGG GGCCCCCGCA GGGCCCACCT CCACCCTGTA TCGTTCCAGC
  GCACGTTCGC CTCACCCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/10SnJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss373453178	MGP_WTSI_7_149764009	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/10SnJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs238138203					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453178	MGP_WTSI_7_149764009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142131841 () rs orientation: forward

Symbol	Name	Function Class
Gm56420	predicted gene, 56420	1181 bp downstream
Gm56421	predicted gene, 56421	186 bp downstream
H19	H19, imprinted maternally expressed transcript	within coordinates
Mir675	microRNA 675	957 bp upstream
Rr658231	regulatory region 658231	31 bp proximal
Rr658232	regulatory region 658232	1155 bp proximal
Rr658233	regulatory region 658233	1766 bp proximal
Tssr2460	transcription start site region 2460	844 bp downstream
Tssr2461	transcription start site region 2461	178 bp downstream
Tssr70214	transcription start site region 70214	1451 bp downstream
Tssr70215	transcription start site region 70215	1128 bp downstream
Tssr70216	transcription start site region 70216	1064 bp downstream
Tssr70217	transcription start site region 70217	1047 bp downstream
Tssr70218	transcription start site region 70218	697 bp downstream
Tssr70219	transcription start site region 70219	659 bp downstream
Tssr70220	transcription start site region 70220	547 bp downstream
Tssr70221	transcription start site region 70221	508 bp downstream
Tssr70222	transcription start site region 70222	450 bp downstream
Tssr70223	transcription start site region 70223	308 bp downstream
Tssr70224	transcription start site region 70224	263 bp downstream
Tssr70225	transcription start site region 70225	225 bp downstream
Tssr70226	transcription start site region 70226	130 bp downstream
Tssr70227	transcription start site region 70227	48 bp downstream
Tssr70228	transcription start site region 70228	35 bp downstream
Tssr75819	transcription start site region 75819	1841 bp upstream
Tssr75820	transcription start site region 75820	1790 bp upstream
Tssr75821	transcription start site region 75821	1777 bp upstream
Tssr75822	transcription start site region 75822	1616 bp upstream
Tssr75823	transcription start site region 75823	1573 bp upstream
Tssr75824	transcription start site region 75824	1540 bp upstream
Tssr75825	transcription start site region 75825	1416 bp upstream
Tssr75826	transcription start site region 75826	1368 bp upstream
Tssr75827	transcription start site region 75827	1348 bp upstream
Tssr75828	transcription start site region 75828	1216 bp upstream
Tssr75829	transcription start site region 75829	726 bp upstream
Tssr75830	transcription start site region 75830	699 bp upstream
Tssr75831	transcription start site region 75831	678 bp upstream
Tssr75832	transcription start site region 75832	612 bp upstream
Tssr75833	transcription start site region 75833	535 bp upstream
Tssr75834	transcription start site region 75834	261 bp upstream
Tssr75835	transcription start site region 75835	229 bp upstream
Tssr75836	transcription start site region 75836	207 bp upstream
Tssr75837	transcription start site region 75837	184 bp upstream
Tssr75838	transcription start site region 75838	114 bp upstream
Tssr75839	transcription start site region 75839	92 bp upstream
Tssr75840	transcription start site region 75840	63 bp upstream
Tssr75841	transcription start site region 75841	36 bp upstream
Tssr75842	transcription start site region 75842	19 bp upstream
Tssr75843	transcription start site region 75843	13 bp upstream
Tssr75844	transcription start site region 75844	within coordinates
Tssr75845	transcription start site region 75845	35 bp downstream