rs238139676 SNP Detail

Summary

• ID
  rs238139676
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129568387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agaaaGTGC CTTGGAATCC CTGGTGTACA
  GAGATCTCCA ACTTCTGAAA TTGCATGCTA TCTTTGCTCA TGTGCTATTA ACCAAATGTA
  CTACACACAC AAAATAAATA AGCAAACAAA CTAGCATTTC TCATCAGAAA TGAGATCTgg
  R
  gctggtgaga tggctcagtg ggtaagagca cccaactgct cttccaaagg tctggagttc
  aaatcctagc aaccacatgg tggctcaaaa ccatctgtaa cgagatctga ctccctcttc
  tggtgtgtct gaagacagct acactgtact                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321314555	CHEV_4_129351838	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238139676					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129568387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	1493 bp distal
Kpna6	karyopherin subunit alpha 6	1827 bp upstream
Rr85538	regulatory region 85538	14 bp proximal
Rr85539	regulatory region 85539	1214 bp proximal
Rr100093	regulatory region 100093	986 bp distal
Tmem39b	transmembrane protein 39b	1761 bp downstream
Tssr43552	transcription start site region 43552	1886 bp upstream
Tssr43553	transcription start site region 43553	1820 bp upstream
Tssr43554	transcription start site region 43554	1801 bp upstream