rs238141252 SNP Detail

Summary

• ID
  rs238141252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24687235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCTCCT CCCCACAGGT
  CAGGAATCTC TGGACTCATA AGTGTGTGCA AGTCAGTAGA GAGTATCAGA TCTCCTGGAG
  CTGGGATTAC AGGCTGTTGT GAGCCCTCTG TGTGGGTGCT AGGGAGTGAA GTCCTCCAGA
  TCTCTAAAGA GGAGCAAATG CTTTTAGCTG CTCATCCATC TCTCCTGGCC TTAGATACAA
  Y
  GTCTCAATCA AGGTAGTGTT TTCTTTTTAT TGTAAGGTTC CCATTGGTTT GCTTCTTGTC
  TGATTTTTTT AGAGTTTGTC AAGGAAGATG GATTTATTTG AAGAAGAGAG TTTTTGTTTT
  TGTTTTTTTA ATTTGGGAGA GAGAGGTTTA CTTAGACCTT GATATAATGT TTCAACTAAT
  GTAGATTTTG TTGGTTGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376945204	MGP_WTSI_9_24580383	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238141252					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376945204	MGP_WTSI_9_24580383	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24687235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	1195 bp distal
Cpgi21502	CpG island 21502	1385 bp proximal
Gm29824	predicted gene, 29824	within coordinates
Rr675417	regulatory region 675417	1146 bp distal
Rr675418	regulatory region 675418	158 bp distal
Rr675419	regulatory region 675419	24 bp distal
Rr675420	regulatory region 675420	293 bp proximal
Rr675421	regulatory region 675421	1051 bp proximal
Rr675422	regulatory region 675422	1772 bp proximal
Tbx20	T-box 20	1655 bp upstream
Tssr88516	transcription start site region 88516	1648 bp upstream