rs238151498 SNP Detail

Summary

• ID
  rs238151498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152495468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCAGAAAG GAAGAGTGAT TATCCCTCTG
  CCAAGGCTGG ACTTGAGAGC TATCAGTTAA GCCAGATGCA ACCTGATCTC TCTAACATCA
  GAAAGTGCAG TGCCCCTGAC CTCCACCACA ACAGACACAA GCAAGGCTTT TGTTAGCCTC
  R
  ATACAAGCAT GTGGTCATAC TATGTAggct ggatgggtgt gaataagttg atagggtgct
  cagctaacat tcatgaagcc ctgggtccaa ttcaaagcat aacataaact agatgtaggg
  acatatacct ggactcggga ggagaatcat                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562912	CHEV_2_152479284	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238151498					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152495468 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	within coordinates
Rr374088	regulatory region 374088	within coordinates
Rr567410	regulatory region 567410	within coordinates
Rr567411	regulatory region 567411	497 bp proximal
Rr567412	regulatory region 567412	794 bp proximal
Tssr26849	transcription start site region 26849	705 bp downstream
Tssr26850	transcription start site region 26850	713 bp downstream
Tssr26851	transcription start site region 26851	740 bp downstream
Tssr26852	transcription start site region 26852	766 bp downstream