rs238153683 SNP Detail

Summary

• ID
  rs238153683
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTTGCT GCAATCCCGC
  TCACTCCAGC CCTGCTCGCT CTTGTCCAAA GATTTGTTAT TATATCTAAG TACACTGTAG
  CTGTCTTCAG ACACACCAGT AGAGGGTGTC AGATCTCATT ACGGATGGTT GTGAGCCACC
  ATGTGGTTGC TGGGACTTGA ACTCAGGACC TTCGGAAGAG CAATCAATGC TCTTAACCAC
  T
  GAGCCATCTC TCCAGCCCGG CAAGATCTCT CTTGTTCACT GTTATATATG TCAGGCAAGC
  AGTCTCAAAC TTCTATAGAG TCTCCTGTGT GTGCCTCCAT CCTGCTGTAA GAACGCTGGG
  ATTACAGATA TGTACCATAG CACCTCATGC TTATGTGGTT AAGAGCTCTA CCCTTTGAGT
  CATCTCCCCT CATTCATCAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320509802	CHEV_2_132639835	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238153683					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656019 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	1527 bp proximal
Rr397334	regulatory region 397334	1839 bp upstream
Rr565537	regulatory region 565537	1945 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr26490	transcription start site region 26490	1879 bp downstream