rs238161171 SNP Detail

Summary

• ID
  rs238161171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127484264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTGTCT TTGTCTTCTT
  CTTTCTCCTT CTCCTCCTCC CCCTTCCTCC CTCCTTCCTC CCTCCCTCTC CCTCCTCCTT
  CTTCTCTAGA CTATTTTTCA TATTTTTGTT TGTTTGTTTT GATTTCTGTT GCTGTTGTTT
  TGAGTCACGA TTTTACTAAG TAGCCCTGGC TGGCCTGGAT CTCTGCATAT ATACCAGGCT
  R
  GCTTCAAACT CAGAGGTCTG TTTGTCTCTG CCTCCTGAGT GTTGAGATGA AAGGTGTATA
  TATCACTATA CCTGTGAAAG ATTTATTTCT AATTATGTTG AATGTTTGTG TATGTTTGGG
  GAGGGGATGG GAGTGGGCAG GGTATATGCA TGTGAGGGCA GGTGCCCACA AAAGCCAGAA
  GGGGCATCAG ATACCCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956107	CHEV_3_127393533	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238161171					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127484264 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	1320 bp downstream
Tssr35587	transcription start site region 35587	133 bp downstream
Tssr35588	transcription start site region 35588	676 bp downstream
Tssr35589	transcription start site region 35589	1931 bp downstream