rs238169006 SNP Detail

Summary

• ID
  rs238169006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGCTCA CAGTCCCTTG
  GGCTCGGGGT TCTGGGCTCC GGGCTTCACA GAGCAGAGAC GTGAAAGAGG CGGAGTCACC
  GGGGACTCGC CCGGGGGTCA GAGGCTGAGC GGGGCTGGGA TGCCCTCTCC AAGCTCAGAG
  CCACCCAACA GCTGCCACTG AGGAGAGAGA GCGAGGTCCT GGGAGGACAA AGAGAGTCTC
  Y
  GCAGCCGCCA CAGCTGCCGC CGGAACTCTG GGCAAATCCC AGTGGACAGA GTCCAGTTCT
  CCCACTCCGG ATTCCGGAGA GTTGCTGCAG ACAATGAGGC CCGCAGCGAC AGCTCTCGGG
  ACAAGTTCCT CGCCTCCCGC TGAGTCTCCG GCGCCCACCC GGGAGCAGAA AGGCTGGCGT
  CTAGCTGCGG TGGTGAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365959467	MGP_WTSI_5_98459794	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238169006					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365959467	MGP_WTSI_5_98459794	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178634 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	177 bp proximal
Tssr1554	transcription start site region 1554	177 bp downstream
Tssr47433	transcription start site region 47433	51 bp downstream
Tssr47434	transcription start site region 47434	39 bp downstream
Tssr47435	transcription start site region 47435	320 bp upstream
Tssr47436	transcription start site region 47436	489 bp upstream
Tssr47437	transcription start site region 47437	524 bp upstream
Tssr51988	transcription start site region 51988	159 bp upstream
Tssr51989	transcription start site region 51989	148 bp upstream
Tssr51990	transcription start site region 51990	128 bp upstream
Tssr51991	transcription start site region 51991	10 bp upstream
Tssr51992	transcription start site region 51992	22 bp downstream
Tssr51993	transcription start site region 51993	195 bp downstream
Tssr51994	transcription start site region 51994	219 bp downstream
Tssr51995	transcription start site region 51995	362 bp downstream
Tssr51996	transcription start site region 51996	522 bp downstream
Tssr51997	transcription start site region 51997	560 bp downstream
Tssr51998	transcription start site region 51998	600 bp downstream
Tssr51999	transcription start site region 51999	635 bp downstream
Tssr52000	transcription start site region 52000	656 bp downstream
Tssr52001	transcription start site region 52001	676 bp downstream
Tssr52002	transcription start site region 52002	696 bp downstream
Tssr52003	transcription start site region 52003	738 bp downstream