rs238171120 SNP Detail

Summary

• ID
  rs238171120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107648837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGTTTAG TAATTATCCC
  CAGAAAGAAC AAAGTCTCTA TAGAATTAGT TCTAGAAAAA TATCTTCACA TCAAAGCTGC
  TATGTCTCCA GAACAAGAGG ACCCAATACA TGCCCAGCAC CATGACTAGA AACAAACATG
  TTCCTAGACA CGCTGAGTGA GAAAGAACGG GGCTCTATTG ATAGATTGGG AAACAGAATG
  Y
  CGTTGGACTT TTTGACAAAA ATTGAAGACG ACGGAGGGAG ACTTCATAAT TCAGACAGAA
  AATTATTCCC AATTTAAAAT TCTGTACCTG GCAAATTGTC AATCAAATAT GAAATACTTT
  TAGCATTGTG AGGCCCTTAC GATTTCACCT TAAGGACCCC TGTTCTAGCT GTTTTCTGTT
  GCTAACAACA GCACTGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251320	CHEV_4_107464245	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238171120					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107648837 () rs orientation: forward

Symbol	Name	Function Class
4933424M12Rik	RIKEN cDNA 4933424M12 gene	1718 bp downstream
Gm69341	predicted gene, 69341	within coordinates
Lrp8os3	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 3	1509 bp downstream