rs238188827 SNP Detail

Summary

• ID
  rs238188827
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152386735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACAAAA CACGGATTTA
  TCCTCTTAAC TGGAATGGTG CTGGTGAGAC ACTGGCTGAT CTCCAGCTCA GTAAAAGGTT
  GTCCGTGATG ATTAAGAAAC TTACCACCAA GGCTGCCCTG GTGTGAGGGC ACAGACTTTG
  TGCTGACAGA TGGGCGGGGC CTGGCCACTG AGGCGTCCCT TGTCTACCCT ATAAGCCAGG
  A
  CACTGCTGTG GGAATACTGC TGCCGAGTCA GTTGGGTGGA GGGCTAGCGC CTTAGCACGG
  TGCTAGGAAC ACAGCAAGTT CTCAGTGAAC AGTGCAGGGA CGAGGCAAGG AGTTGGGGGC
  GGGTCTGGTA TCGCCGGACA GGTCCTGATG CCTGCAGTGA GTAGGGCTGG GTTAGTGGTT
  TCCACAGCAA CAAAGGAAGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434091	CHEV_4_151676387	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238188827					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152386735 () rs orientation: forward

Symbol	Name	Function Class
Gm70210	predicted gene, 70210	1009 bp downstream
Icmt	isoprenylcysteine carboxyl methyltransferase	within coordinates
Rr605836	regulatory region 605836	953 bp proximal