rs238190751 SNP Detail

Summary

• ID
  rs238190751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142207543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGAACT GCTGAGATCC
  CCTTGCCCGA TGGTGTGGGG CAAGGGGAAC AGCCTGATGT GGGGAGGCGG GGCATGGGGG
  TGGGTAAGGA GAAACCTGGG GAGGGAGTGG AGCAGAGAGA TCTTAGTGTG GGACGTGATG
  GAACTGTCCC TGCTCAAGAG GAGGTCACAG ATTGATGGTA CTACATTGCA GAATTACCAC
  R
  TAATTTGATT CACTGATGGT TGCTGGACAT CTCCGAAGAG GCTCCCCCGT GGGCGGGGTC
  TTTGGGTGGT AACACGATCA GGGGACGATG ACGTTTGGCC TCTCTGAACT CTTTGAGCTC
  TTTGGCAAGC ATGCGACCCC GGCGGGCACG CAGGAGGGCA GGCAGGCCTC TGCGCAGGCG
  TCCCGCGGAC TGTCTCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454561	MGP_WTSI_7_149839711	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238190751					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454561	MGP_WTSI_7_149839711	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142207543 () rs orientation: forward

Symbol	Name	Function Class
Gm49394	predicted gene, 49394	mRNA-UTR
Igf2	insulin-like growth factor 2	mRNA-UTR
Mir483	microRNA 483	1118 bp downstream
Rr658247	regulatory region 658247	1660 bp proximal
Tssr2462	transcription start site region 2462	749 bp downstream
Tssr2463	transcription start site region 2463	38 bp downstream
Tssr70229	transcription start site region 70229	789 bp downstream
Tssr70230	transcription start site region 70230	696 bp downstream
Tssr70231	transcription start site region 70231	241 bp downstream
Tssr70232	transcription start site region 70232	188 bp downstream
Tssr70233	transcription start site region 70233	145 bp downstream
Tssr70234	transcription start site region 70234	107 bp downstream
Tssr70235	transcription start site region 70235	84 bp downstream
Tssr70236	transcription start site region 70236	62 bp downstream
Tssr70237	transcription start site region 70237	23 bp upstream
Tssr70238	transcription start site region 70238	42 bp upstream
Tssr70239	transcription start site region 70239	186 bp upstream
Tssr70240	transcription start site region 70240	507 bp upstream
Tssr75854	transcription start site region 75854	1764 bp upstream
Tssr75855	transcription start site region 75855	1580 bp upstream
Tssr75856	transcription start site region 75856	1541 bp upstream
Tssr75857	transcription start site region 75857	1526 bp upstream
Tssr75858	transcription start site region 75858	1488 bp upstream
Tssr75859	transcription start site region 75859	1432 bp upstream
Tssr75860	transcription start site region 75860	1377 bp upstream
Tssr75861	transcription start site region 75861	1345 bp upstream
Tssr75862	transcription start site region 75862	798 bp upstream
Tssr75863	transcription start site region 75863	767 bp upstream
Tssr75864	transcription start site region 75864	738 bp upstream
Tssr75865	transcription start site region 75865	705 bp upstream
Tssr75866	transcription start site region 75866	658 bp upstream
Tssr75867	transcription start site region 75867	625 bp upstream
Tssr75868	transcription start site region 75868	606 bp upstream
Tssr75869	transcription start site region 75869	584 bp upstream
Tssr75870	transcription start site region 75870	571 bp upstream
Tssr75871	transcription start site region 75871	527 bp upstream
Tssr75872	transcription start site region 75872	119 bp upstream
Tssr75873	transcription start site region 75873	107 bp upstream
Tssr75874	transcription start site region 75874	91 bp downstream
Tssr75875	transcription start site region 75875	128 bp downstream
Tssr75876	transcription start site region 75876	160 bp downstream
Tssr75877	transcription start site region 75877	236 bp downstream
Tssr75878	transcription start site region 75878	512 bp downstream
Tssr75879	transcription start site region 75879	534 bp downstream
Tssr75880	transcription start site region 75880	584 bp downstream
Tssr75881	transcription start site region 75881	1878 bp downstream
Tssr75882	transcription start site region 75882	1919 bp downstream