rs238192963 SNP Detail

Summary

• ID
  rs238192963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153424121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCTGGC CTGCTGGGAA
  GGTTTCTTTA TGCCTCCAGG GTTTCTCTGT CTAGCCTTGG CTGTCCTGGA ACTCACTCTG
  TAGACCAGGC TGGCCTCGAA CTCAGAAATT CGCCTGCCTC TGCCTCCCGA GTGCTGGGAT
  TATAGGCATG CGCCACCACT GCCCAGCTGG GAAGGTTTCT TTATGCCTAC AGTGTACCAG
  Y
  TCCACTGTTC AAAAACATTC CCGAGGCCAC TGCCTGTTTC CCCCGTGGCT TATCTTTGCT
  TCAGAGCATC TGTCTCCCAC TTCAATCCCT TCAGTGTAGC TCACTTTTCA AACTCACTCT
  AAGAGTCAAG GAATTGCTAT GCATCTGAAG ACCAGCATCT GGGAGGTGGA GGCAGGAGGG
  TTGGGAGTTC AAACCCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351975306	MGP_WTSI_1_155395505	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238192963					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351975306	MGP_WTSI_1_155395505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153424121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	1110 bp proximal
F630010C12Rik	RIKEN cDNA F630010C12 gene	47 bp downstream
Npl	N-acetylneuraminate pyruvate lyase	within coordinates
Rr372265	regulatory region 372265	1587 bp downstream
Rr420696	regulatory region 420696	399 bp distal
Rr420697	regulatory region 420697	1067 bp proximal
Rr420698	regulatory region 420698	1660 bp proximal
Tssr14276	transcription start site region 14276	1322 bp downstream
Tssr14277	transcription start site region 14277	1359 bp downstream
Tssr14278	transcription start site region 14278	1443 bp downstream
Tssr14279	transcription start site region 14279	1463 bp downstream
Tssr14280	transcription start site region 14280	1670 bp downstream