rs238196801 SNP Detail

Summary

• ID
  rs238196801
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTGCCT AACCACAGTG
  TCACCCACCG CAGGTTCCCT TCATTCTGCC GGCTTCTGCT CTGGGCCTTC TCAAGGCTGA
  GGGCAGTTAT TTTGTCTCTA AGAGATAAAG AACACCAAAA CTTGCATGTT CACGGGCGTG
  TGCACATGTT TAATCATCTC CATCATCGGG AGGTTGCAGC CAGCATCTCT AAGCTAAAGA
  S
  GTTTGAAAAA GGCTCTCAAA CTCAGCAAGT TTAAAGCAGT TTCTGACACC AAAGCTAGAT
  TACAGACCAA GGGAAGGAGA CGGACTGAGG GCGGCAGGGA AGATAGAAAC AAAATGGGGA
  GATATGTGTG TGGTAGTCAG AGGCTGAACA ACAGGCAGGG CAGGGTAAAT GCGAGATCAG
  GGCCTGGGTA CATCTATGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353645	CHEV_7_109397504	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238196801					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	652 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1459 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	1088 bp proximal
Rr652564	regulatory region 652564	1931 bp proximal
Tssr2354	transcription start site region 2354	1269 bp upstream
Tssr68327	transcription start site region 68327	1232 bp downstream
Tssr68328	transcription start site region 68328	630 bp upstream
Tssr68329	transcription start site region 68329	712 bp upstream
Tssr68330	transcription start site region 68330	1230 bp upstream
Tssr73938	transcription start site region 73938	1903 bp upstream
Tssr73939	transcription start site region 73939	372 bp downstream
Tssr73940	transcription start site region 73940	422 bp downstream
Tssr73941	transcription start site region 73941	464 bp downstream
Tssr73942	transcription start site region 73942	552 bp downstream
Tssr73943	transcription start site region 73943	1085 bp downstream
Tssr73944	transcription start site region 73944	1096 bp downstream
Tssr73945	transcription start site region 73945	1137 bp downstream
Tssr73946	transcription start site region 73946	1333 bp downstream
Tssr73947	transcription start site region 73947	1476 bp downstream
Tssr73948	transcription start site region 73948	1501 bp downstream
Tssr73949	transcription start site region 73949	1537 bp downstream
Tssr73950	transcription start site region 73950	1586 bp downstream