rs238200339 SNP Detail

Summary

• ID
  rs238200339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20779984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACGACTAC CGTGTTTCAA
  AACCATAAAA AAAGAAGTCT TTTGGCCTTC TCAAGGGTCA AAGATTAACT GTAGGCCTAT
  TTTTATCATC ACTGATATAA ATAGCTATCT GCAGAGATGA TGGCTAGGAT TGATACACAT
  TCTTTTCATG GGAACATGGT ACTTTCTTGG CACTCCTAAC TAGTGACACT GTGCAAGTAG
  R
  GTAAGGGGAG GAGGCAGCCG CGGGACTCAG CAATGGCAGG GCTCTGCCCT TACCTTTCGG
  GGTTGAGATC TACGATGCCC ATCACTAATA CCTTCTTGCC TGGTCTCATG CCACCTTTAA
  TGTGCCCACA AAATGGAACT ATCTGCAAAG GAAGAGGGGA GAGACAGGAT GTTTATGGGC
  TGTTAGAGAC GAGCCAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382653323	MGP_WTSI_11_20729987	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238200339					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382653323	MGP_WTSI_11_20729987	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20779984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2627	CpG island 2627	294 bp proximal
Gm12037	predicted gene 12037	1371 bp downstream
Lgalsl	galectin like	within coordinates
Rr443483	regulatory region 443483	1062 bp proximal
Rr443484	regulatory region 443484	1413 bp proximal
Rr443485	regulatory region 443485	1948 bp proximal
Tssr3438	transcription start site region 3438	794 bp downstream
Tssr107046	transcription start site region 107046	1025 bp downstream
Tssr107047	transcription start site region 107047	1076 bp downstream
Tssr107048	transcription start site region 107048	1189 bp downstream
Tssr107049	transcription start site region 107049	1220 bp downstream
Tssr107050	transcription start site region 107050	1239 bp downstream
Tssr107051	transcription start site region 107051	1326 bp downstream