rs238216732 SNP Detail

Summary

• ID
  rs238216732
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26729740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACAATCC AGGTAGTGAG
  GATGCCTTGG TTTCTGGGGC AGAACCAGAG AGGCTGCTGC TGCATTGGAG GCTTAGCTGC
  TGAGGGCCGG GGACAGTGTG AGGCAGTAGA TTTCAACTCT AGGAGAGGCC TCCCTGACCT
  GAGAGCCTCC CCATTCCAGG TGTGTTTAGA AGCAACAAGC AACGTTAGAG GCCACAGGGG
  K
  TGATAAGAAT CAGCCAAAAG ACTTAGCCTG CCTCTCCCCT TTAACTGTGT GGCCTCTCCT
  CATTCACTTT ACCATGCCAC AGCTCCCTGT GACTGGGCGA GAAGCAGCAG CTTCTATACG
  GGACCTGTGG GGACAGTCGG TGTGCAGGCT TGGCACCAGC CTATGAACCT GTCAGTTCCT
  CTCATTTGGA TTTGTCTTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397901260	MGP_WTSI_17_26647711	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238216732					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901260	MGP_WTSI_17_26647711	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26729740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8811	CpG island 8811	1743 bp distal
Gm56886	predicted gene, 56886	773 bp downstream
Rr339410	regulatory region 339410	939 bp distal
Rr392454	regulatory region 392454	125 bp upstream
Rr405113	regulatory region 405113	1661 bp downstream
Rr406958	regulatory region 406958	76 bp distal
Tssr5044	transcription start site region 5044	1802 bp downstream
Tssr5045	transcription start site region 5045	1298 bp upstream
Tssr5046	transcription start site region 5046	1245 bp upstream
Tssr5047	transcription start site region 5047	1234 bp upstream
Tssr143234	transcription start site region 143234	1992 bp downstream
Tssr143235	transcription start site region 143235	1058 bp downstream
Tssr143236	transcription start site region 143236	1025 bp downstream
Tssr143237	transcription start site region 143237	1961 bp upstream
Tssr146955	transcription start site region 146955	1884 bp upstream
Tssr146956	transcription start site region 146956	1267 bp upstream
Tssr146957	transcription start site region 146957	1197 bp upstream