rs238218023 SNP Detail

Summary

• ID
  rs238218023
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48531177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCACCGC CCCCGAGTGC
  GCGGGGCTGG AGCGCGGGCG AGCCCCTCCC CCGCCCTCTG CGCGGGAGCT CGGCTCCTCC
  CCACGGGCCC CGGCGGGGCG GGAGGCGGGA AACGGCCGCC TTCACCCTGG CCTTCCCGGG
  ATCCCACAAC CCCGCCGCAG CAGTCTGCTC CCCGCTCACC TGTCAATCCT CCTTCAGAGC
  W
  GACGGTCCGG GGTGGCCCCG AATCCTGGCT GCGCGTCTCA GGGAGCCAGC GCGTCTCAGG
  GAGACTCGCT TAGCCCCGCC GCGCAGAGGT GGGTGCCGGG GGCGCCACCG GGGCCGGGGC
  TGGGGGGGGC CGGCGGGCGG GCCGCGGGAG CGTGGCCGTC CAGGAGCAGT CCAGCCCCCG
  ATTTGAAATT AACCCGCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss371266122	MGP_WTSI_7_56136799	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238218023					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371266122	MGP_WTSI_7_56136799	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48531177 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19137	CpG island 19137			within coordinates
E2f8	E2F transcription factor 8			Intron
				mRNA-UTR
Gm2788	predicted gene 2788			within coordinates
Rr400335	regulatory region 400335			182 bp downstream
Rr400336	regulatory region 400336			220 bp upstream
Rr646936	regulatory region 646936			1542 bp distal
Rr646937	regulatory region 646937			399 bp distal
Rr646938	regulatory region 646938			45 bp distal
Rr646939	regulatory region 646939			within coordinates
Rr646940	regulatory region 646940			157 bp proximal
Tssr66768	transcription start site region 66768			64 bp downstream
Tssr66769	transcription start site region 66769			435 bp upstream
Tssr72630	transcription start site region 72630			439 bp upstream
Tssr72631	transcription start site region 72631			399 bp upstream
Tssr72632	transcription start site region 72632			379 bp upstream
Tssr72633	transcription start site region 72633			175 bp downstream
Tssr72634	transcription start site region 72634			212 bp downstream
Tssr72635	transcription start site region 72635			922 bp downstream
Tssr72636	transcription start site region 72636			1906 bp downstream