rs238218158 SNP Detail

Summary

• ID
  rs238218158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCAGA TATTGGTTGA
  CGGTCTCCAC GTCAGCCACT CAGTTACTCC CGCTCCCCCA TCCTCACCCC AGTTTGGGGT
  TTAATGGAAT GAGGGGGAGG GTACAGGAAA TAGGAGGCTG TGGGTAACTG TCTGGGCAGC
  ACATTGAAGG GTAGAGATGT GGGGTGGGTA TAGAGAGGGG CTGAGATGGC AGATACACAC
  Y
  GGGCCTATGT ATGTCCATGC AAGTCGTGCG CTTGATAAAG GAGATTCCCA GCCCCCTTCC
  CTCAAGTCTC TTCATCTTAG TTCTGAGCTA TGTGTGGCTG CTCTGGACTC ACTCAAGTAC
  ACTCCTCCCA GGTATGTTCG ACCAGGTGGG GGCTTTGTGC CTAATTTCCA GCTCTTTGAG
  AAAGGAGATG TGAACGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428902	MGP_WTSI_11_54722410	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238218158					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428902	MGP_WTSI_11_54722410	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799734 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	Intron
Tnip1	TNFAIP3 interacting protein 1	1877 bp downstream
Tssr3502	transcription start site region 3502	733 bp downstream
Tssr3503	transcription start site region 3503	1207 bp upstream
Tssr101556	transcription start site region 101556	1778 bp downstream
Tssr101557	transcription start site region 101557	1748 bp downstream
Tssr101558	transcription start site region 101558	1731 bp downstream
Tssr101559	transcription start site region 101559	1708 bp downstream
Tssr101560	transcription start site region 101560	1662 bp downstream
Tssr101561	transcription start site region 101561	351 bp downstream
Tssr101562	transcription start site region 101562	304 bp downstream
Tssr101563	transcription start site region 101563	292 bp downstream
Tssr101564	transcription start site region 101564	271 bp downstream
Tssr101565	transcription start site region 101565	144 bp upstream
Tssr101566	transcription start site region 101566	194 bp upstream
Tssr101567	transcription start site region 101567	555 bp upstream
Tssr101568	transcription start site region 101568	631 bp upstream
Tssr101569	transcription start site region 101569	714 bp upstream
Tssr101570	transcription start site region 101570	736 bp upstream
Tssr101571	transcription start site region 101571	790 bp upstream
Tssr101572	transcription start site region 101572	885 bp upstream
Tssr101573	transcription start site region 101573	922 bp upstream
Tssr101574	transcription start site region 101574	936 bp upstream
Tssr101575	transcription start site region 101575	984 bp upstream
Tssr101576	transcription start site region 101576	998 bp upstream
Tssr101577	transcription start site region 101577	1027 bp upstream
Tssr101578	transcription start site region 101578	1110 bp upstream
Tssr108006	transcription start site region 108006	1623 bp upstream
Tssr108007	transcription start site region 108007	334 bp upstream
Tssr108008	transcription start site region 108008	273 bp upstream
Tssr108009	transcription start site region 108009	257 bp upstream
Tssr108010	transcription start site region 108010	153 bp downstream
Tssr108011	transcription start site region 108011	749 bp downstream
Tssr108012	transcription start site region 108012	783 bp downstream
Tssr108013	transcription start site region 108013	877 bp downstream
Tssr108014	transcription start site region 108014	884 bp downstream
Tssr108015	transcription start site region 108015	967 bp downstream
Tssr108016	transcription start site region 108016	1019 bp downstream
Tssr108017	transcription start site region 108017	1070 bp downstream
Tssr108018	transcription start site region 108018	1085 bp downstream
Tssr108019	transcription start site region 108019	1121 bp downstream
Tssr108020	transcription start site region 108020	1177 bp downstream
Tssr108021	transcription start site region 108021	1197 bp downstream
Tssr108022	transcription start site region 108022	1208 bp downstream
Tssr108023	transcription start site region 108023	1461 bp downstream