rs238219867 SNP Detail

Summary

• ID
  rs238219867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115506619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAGCAG ATGAGAATGA
  ACACCACTGA AGTCAGTTTA ATGCCATGGT CCTTCTCCGC CCCGATGTTC AACTTGCCTG
  TGTAGTTGTA ATGCCGGACT ATGATATCAT AGTTCCCATA GTCAGAGACT GAGCTGCGGA
  GAGCTTTAAC CTCCGGGATG CTAGTGGACA CCATAGCTGC TAATTGTGTC CCCAGGAGCC
  Y
  GGGGTGGTAT TTCTCCAGGC AAACGCTAGA GGGCGAGGTT GAGTGAGCCT TCAGTTACAG
  CAAAGCCAGG TCAGCGAGCA ATCCAATGCT TTTTTCTTTT ATGGAGCTTT TCCTTGGCTG
  GAGAGGCCTC CGAGAAACAG CAGCCTTAAA CAAGTTACAA AGAAAAGAAT CAGGGAAAAT
  GCCCAGCACA CTAGCATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359333849	MGP_WTSI_3_115415888	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238219867					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359333849	MGP_WTSI_3_115415888	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115506619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	419 bp distal
Cpgi13725	CpG island 13725	1674 bp proximal
Rr583584	regulatory region 583584	19 bp proximal
Rr583585	regulatory region 583585	1563 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr35268	transcription start site region 35268	1922 bp upstream
Tssr35269	transcription start site region 35269	1785 bp upstream
Tssr35270	transcription start site region 35270	1772 bp upstream
Tssr35271	transcription start site region 35271	1725 bp upstream
Tssr35272	transcription start site region 35272	1689 bp upstream
Tssr35273	transcription start site region 35273	416 bp upstream
Tssr35274	transcription start site region 35274	357 bp upstream
Tssr35275	transcription start site region 35275	103 bp upstream
Tssr35276	transcription start site region 35276	747 bp downstream
Tssr35277	transcription start site region 35277	823 bp downstream
Tssr35278	transcription start site region 35278	1810 bp downstream
Tssr35279	transcription start site region 35279	1832 bp downstream
Tssr35280	transcription start site region 35280	1884 bp downstream
Tssr35281	transcription start site region 35281	1919 bp downstream
Tssr35282	transcription start site region 35282	1963 bp downstream