rs238219929 SNP Detail

Summary

• ID
  rs238219929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:116406846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCACAG TGCTGTTTGA
  CTTAGTCCAG GAAGTGTTTC AGAAGATGTT GGAATGTATT GCCTGTATCT TCAGGAAGCA
  ACCTGAAGAA AGTCTTCCGG TATTGTGCTT GAATGGGCTG GGTTATTTGA TAGGGGGTGG
  TGGTGGGGTG GGGAGGTGGG TGTTAGTAGG AAGGGTGGAT GGGTATTTTC AGGGCGACTG
  R
  GTTAGATGTG TATAGAGACT GTGGCTGTCC ACATTGACTC TTACTGTGCT GTCTGCTAAA
  GGCATTGAGT GATGGTTGAT GCCAACCCTA ATGCCAGGCA TGCTTGCATT CTTTGGTGGC
  ATGCAGATCC ACATTCTATA GCTCGGTGAC TGATGGCCCA GATAGAATAT ATTTGTGAAG
  ATGCTCATTT GAACAGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324195676	CHEV_12_117681699	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238219929					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:116406846 () rs orientation: forward

Symbol	Name	Function Class
Ncapg2	non-SMC condensin II complex, subunit G2	within coordinates
Tg(Camk2a-tTA)1Mmay	transgene insertion 1, Mark Mayford	within coordinates
Tssr115524	transcription start site region 115524	250 bp downstream