rs238232421 SNP Detail

Summary

• ID
  rs238232421
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67142921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGCTGA CACTGGCCAA
  GGTTGAGAAG GAGAAGCACG CCACGGAGAA CAAGGTACAA CCACTATTCA CTTTCAAGCA
  TTTACAAATA CTCAAGCCTG ACTCTTAAAC CTTAAAATCA TGGAACGTGA AAGGGAAAAT
  GTTACAATGT TGCCATCTTT TTTATGGCTG CTGTATTCCC TGTCAGGATG TTGTCCTGAG
  W
  AGTTAAATTA TCATGTATTT TGGCAAGATG ACATGTTTTT TTTTTTTTTT TTAATCAACA
  TTCCCATCAT CTGTCCAAAT CTAAAGGTGA AAAACCTGAC AGAAGAGATG GCAGGCCTGG
  ATGAAAATAT CGCCAAGCTG ACCAAGGAGA AGAAGGCCCT CCAGGAGGCC CACCAGCAGA
  CCCTGGATGA CCTGCAGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730816	MGP_WTSI_11_67065597	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238232421					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730816	MGP_WTSI_11_67065597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67142921 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Rr449442	regulatory region 449442	1703 bp proximal
Tssr3526	transcription start site region 3526	1718 bp downstream
Tssr3527	transcription start site region 3527	1218 bp upstream
Tssr102188	transcription start site region 102188	1757 bp downstream
Tssr102189	transcription start site region 102189	1569 bp downstream
Tssr102190	transcription start site region 102190	1553 bp downstream
Tssr102191	transcription start site region 102191	1532 bp downstream
Tssr102192	transcription start site region 102192	1526 bp downstream
Tssr102193	transcription start site region 102193	1483 bp downstream
Tssr102194	transcription start site region 102194	1341 bp downstream
Tssr102195	transcription start site region 102195	1258 bp downstream
Tssr102196	transcription start site region 102196	1219 bp downstream
Tssr102197	transcription start site region 102197	1175 bp downstream
Tssr102198	transcription start site region 102198	1114 bp downstream
Tssr102199	transcription start site region 102199	360 bp downstream
Tssr102200	transcription start site region 102200	209 bp downstream
Tssr102201	transcription start site region 102201	1380 bp upstream
Tssr102202	transcription start site region 102202	1902 bp upstream
Tssr102203	transcription start site region 102203	1962 bp upstream
Tssr108528	transcription start site region 108528	1451 bp upstream
Tssr108529	transcription start site region 108529	1137 bp upstream
Tssr108530	transcription start site region 108530	1135 bp upstream
Tssr108531	transcription start site region 108531	1107 bp upstream
Tssr108532	transcription start site region 108532	337 bp upstream
Tssr108533	transcription start site region 108533	185 bp upstream
Tssr108534	transcription start site region 108534	501 bp downstream
Tssr108535	transcription start site region 108535	597 bp downstream
Tssr108536	transcription start site region 108536	1949 bp downstream
Tssr108537	transcription start site region 108537	1961 bp downstream