rs238236446 SNP Detail

Summary

• ID
  rs238236446
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164909028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAC TGGTTCAACA TAGAAAAGGG
  A
  TGCTGAGATG GGTCAGTAAG TTAAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320607403	CHEV_2_164892608	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238236446					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164909028 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Rr52793	regulatory region 52793	1995 bp proximal
Tssr21713	transcription start site region 21713	1389 bp downstream
Tssr21714	transcription start site region 21714	424 bp downstream
Tssr21715	transcription start site region 21715	390 bp downstream
Tssr21716	transcription start site region 21716	340 bp downstream
Tssr21717	transcription start site region 21717	247 bp downstream
Tssr21718	transcription start site region 21718	200 bp downstream
Tssr21719	transcription start site region 21719	106 bp downstream
Tssr21720	transcription start site region 21720	78 bp upstream
Tssr21721	transcription start site region 21721	121 bp upstream
Tssr21722	transcription start site region 21722	991 bp upstream
Tssr27603	transcription start site region 27603	1724 bp upstream