rs238237914 SNP Detail

Summary

• ID
  rs238237914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87843056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCCTAGG AAGAAAAGAA
  CCGTTAGTCC ACACTTCAGC AAAGTCGACA TTCTTTATTG ATTAATTAAT AATCCTTTAC
  CCAATGATAA GCAAAGGAAT GAACAACTAC AAAAACCTTC ATTTGCTTAA AAATCTACCA
  TGTCCTAGGT GAATACAGTA ATTAATGGCT TTAAATCTAG CAGGTTGAAG TCTGATGCAG
  R
  AGAATTACTA TAACTTTGAG AACACCCTGA AATAAAAGGT AAATTCTAGG CAATCCTGGG
  GTACAGATTA AGGCCCTTTT TTTTTAAAGA TACACAAAGC AAGAAAGCAT TGTCTAGGGT
  AACATGAAGA AAATAAGTGT TCTTAAGGAG TGTCTCCTAA CCTATTCTAC TTATGGATGG
  ATTACAGAGT AAAATAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777298	MGP_WTSI_5_88124222	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238237914					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777298	MGP_WTSI_5_88124222	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87843056 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1219 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1179 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	1022 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	1334 bp distal
Tssr1529	transcription start site region 1529	636 bp downstream
Tssr46883	transcription start site region 46883	686 bp downstream
Tssr46884	transcription start site region 46884	671 bp downstream
Tssr46885	transcription start site region 46885	650 bp downstream
Tssr46886	transcription start site region 46886	620 bp downstream
Tssr46887	transcription start site region 46887	603 bp downstream
Tssr46888	transcription start site region 46888	497 bp downstream
Tssr46889	transcription start site region 46889	478 bp downstream
Tssr46890	transcription start site region 46890	445 bp downstream
Tssr46891	transcription start site region 46891	432 bp downstream
Tssr46892	transcription start site region 46892	403 bp downstream
Tssr46893	transcription start site region 46893	377 bp downstream
Tssr46894	transcription start site region 46894	332 bp downstream
Tssr46895	transcription start site region 46895	312 bp downstream
Tssr46896	transcription start site region 46896	233 bp downstream
Tssr51618	transcription start site region 51618	657 bp upstream
Tssr51619	transcription start site region 51619	623 bp upstream
Tssr51620	transcription start site region 51620	613 bp upstream
Tssr51621	transcription start site region 51621	594 bp upstream
Tssr51622	transcription start site region 51622	558 bp upstream
Tssr51623	transcription start site region 51623	542 bp upstream
Tssr51624	transcription start site region 51624	525 bp upstream
Tssr51625	transcription start site region 51625	515 bp upstream
Tssr51626	transcription start site region 51626	503 bp upstream
Tssr51627	transcription start site region 51627	477 bp upstream
Tssr51628	transcription start site region 51628	367 bp upstream
Tssr51629	transcription start site region 51629	273 bp upstream
Tssr51630	transcription start site region 51630	225 bp upstream
Tssr51631	transcription start site region 51631	186 bp upstream
Tssr51632	transcription start site region 51632	71 bp downstream
Tssr51633	transcription start site region 51633	856 bp downstream
Tssr51634	transcription start site region 51634	978 bp downstream
Tssr51635	transcription start site region 51635	1942 bp downstream
Tssr51636	transcription start site region 51636	1968 bp downstream