rs238238065 SNP Detail

Summary

• ID
  rs238238065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57527312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAACTCTT CTATGGTCCA
  CAACCAGCTC TGTGGGAAGT GGCTTCTAGA GATAATATCT TCTTCTGGAA TTATGTCTTC
  CTCCAATTCA CCTGAGGGTA GGGAGACTTT TGGAAAAGTC TGCAGGTGGC TCCCTTGCAA
  ACATTTCTGA GCTGCGTAAA TGCATTCACC AGTGTGATGG TTTTCTACCA GCTCCAGACA
  Y
  GCTGGTCTGT GGGGATTTCC TCTCTCCACC TAGGAACTAA AAACTAAAAA TCATGTTCTA
  CAGATGTATT GCTATCAAGA CGAGCATCAT CCAAACTGGT CGGGAACTTG TTAGGTAGTC
  CATGCTGGCC TGGGACCTGC AGCAACCCTT CTACCTCAGC CTCCTGAGTG CTAAAATGAC
  AGGCATGTGC GACCACACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573121	MGP_WTSI_17_57359735	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238238065					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573121	MGP_WTSI_17_57359735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57527312 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Gm65552	predicted gene, 65552	within coordinates
Rr405394	regulatory region 405394	827 bp downstream
Rr529295	regulatory region 529295	954 bp distal
Tssr145377	transcription start site region 145377	1878 bp upstream
Tssr148931	transcription start site region 148931	1787 bp upstream
Tssr148932	transcription start site region 148932	1644 bp upstream
Tssr148933	transcription start site region 148933	1420 bp upstream
Tssr148934	transcription start site region 148934	116 bp upstream
Tssr148935	transcription start site region 148935	729 bp downstream
Tssr148936	transcription start site region 148936	746 bp downstream
Tssr148937	transcription start site region 148937	769 bp downstream
Tssr148938	transcription start site region 148938	1040 bp downstream
Tssr148939	transcription start site region 148939	1603 bp downstream
Tssr148940	transcription start site region 148940	1938 bp downstream