rs238241100 SNP Detail

Summary

• ID
  rs238241100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82422930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCCTCG CCCGCCCGGT
  GCCGGCTCTC CCCGCTCGGG CGCTGGGATG GGCGCACACG GCAGCCGTGG TCCCACGCCG
  CCCGCACAGC CCACCGCAAC TCCGCACTAC TTCTCGGGGA AGACCAGGGT GTGCCAAGGT
  TAGGCAAAGC CTTTGAGGGT CTGCAGCACA AGAGCAAGAA GACACAACAA AGGCGTCTGG
  R
  GCCAGAGAAA GCTCGAGAAA GCGACCAAGA TAAGTACCTG AGTGAGACAG ATGGGAGAAT
  ACATCATGAC TTCGCCTTAA AACGCACTTT CCCGGAGATG CCCAAGAAAA TCTTCCAGAA
  GCAAGGATTT CATCTATTCA TTTTACAGTC ATCTGAGCCC AGCGATGCGA TCAATCAGGA
  CGGGGCACTG CGCCGGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362190662	MGP_WTSI_4_82150597	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238241100					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190662	MGP_WTSI_4_82150597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82422930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	within coordinates
Gm57123	predicted gene, 57123	1090 bp downstream
Nfib	nuclear factor I/B	within coordinates
Rr594356	regulatory region 594356	1547 bp distal
Rr594357	regulatory region 594357	within coordinates
Rr594358	regulatory region 594358	605 bp proximal
Tssr37680	transcription start site region 37680	1230 bp upstream
Tssr42247	transcription start site region 42247	202 bp downstream
Tssr42248	transcription start site region 42248	529 bp downstream
Tssr42249	transcription start site region 42249	551 bp downstream
Tssr42250	transcription start site region 42250	581 bp downstream
Tssr42251	transcription start site region 42251	677 bp downstream
Tssr42252	transcription start site region 42252	903 bp downstream
Tssr42253	transcription start site region 42253	986 bp downstream
Tssr42254	transcription start site region 42254	1025 bp downstream
Tssr42255	transcription start site region 42255	1056 bp downstream
Tssr42256	transcription start site region 42256	1110 bp downstream
Tssr42257	transcription start site region 42257	1140 bp downstream
Tssr42258	transcription start site region 42258	1165 bp downstream
Tssr42259	transcription start site region 42259	1739 bp downstream