rs238241606 SNP Detail

Summary

• ID
  rs238241606
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32904393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATTCTC CTAGCAGGAG
  AATTCCTGTT AATGATTTTG CTAGATACAC TGTCGTCTCT GACGAGTCTC TGACGCGTAG
  GGATACCCCT ACTTGGCTGT GGATGTTAGA CTCAGACTTA CCTCTGCTAA CCTCAGAGTT
  TTGCTCCCAA ATCTCTCCTG CCCTCAACCT CCATCCCCAT GCCCATCCTC CATCCCACCC
  C
  CCCACCCCCC GCCCTCCCCC ATGATGTGAG AGGGAACAAG TTCTAAGGCT CTGGTGTTCA
  TGCTGTGACC CTGAATTGAT TTCACTCTGT ACCCTGCTGA CCCAACCCCC TCCTTTTGGC
  CTTCTGCCCC AGAGGGGAGG AGGCAGTTGG GCCTGTGAAG GATTGGCTGA CACAACTGAG
  CTCAGCCTCC TTCAGAGCAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss398037639	MGP_WTSI_17_32822364	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs238241606					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398037639	MGP_WTSI_17_32822364	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32904393 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15	212 bp upstream
Tssr143733	transcription start site region 143733	166 bp upstream
Tssr143734	transcription start site region 143734	191 bp upstream
Tssr143735	transcription start site region 143735	220 bp upstream
Tssr143736	transcription start site region 143736	236 bp upstream
Tssr143737	transcription start site region 143737	674 bp upstream