rs238243059 SNP Detail

Summary

• ID
  rs238243059
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57368359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCCTTTT GAGCCAAGGT
  CTCTGTAGCC TCGCTGGCCT TGAATGTGCA GCAGTTCGCC TGCTTCGGAA TCCCAGTTGC
  TGGGACGGCA ATCACGTGCC ATCATATCCG GTGCATGACC ACCTTTTACC CAAAGATACA
  TCCAGAGGTC ATGCGGTCCC CACCCAAGCT GTGCCCATAC ATCTGTGGTG AACAGGTGAA
  W
  GTCCCACCCA CTCCCTCTAC CAGCTACCAG ATGTTTCCAT GCATAAGAGT TTCTGTGTGG
  GTGCCGTGGG ACATCACTAC TTCTGCGCAG ACGCCCCAAA TCCATGCTTC CTCACAGACA
  CTTCCCTGGC AGGTGGACCT CATACGGATG TTCTTCAGTG TGGACATAAG GCCTTCCGTT
  AAGCTGGGCG AGATTCTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398569763	MGP_WTSI_17_57200782	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238243059					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398569763	MGP_WTSI_17_57200782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57368359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9390	CpG island 9390	1401 bp distal
Cpgi9391	CpG island 9391	536 bp distal
Cpgi9392	CpG island 9392	605 bp proximal
Crb3	crumbs family member 3	224 bp upstream
Rr405393	regulatory region 405393	897 bp downstream
Rr529261	regulatory region 529261	1006 bp distal
Rr529262	regulatory region 529262	382 bp proximal
Rr529263	regulatory region 529263	951 bp proximal
Slc25a23	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	1496 bp upstream
Tssr145365	transcription start site region 145365	602 bp downstream
Tssr145366	transcription start site region 145366	901 bp upstream
Tssr145367	transcription start site region 145367	958 bp upstream
Tssr145368	transcription start site region 145368	994 bp upstream
Tssr145369	transcription start site region 145369	1127 bp upstream
Tssr145370	transcription start site region 145370	1166 bp upstream
Tssr148875	transcription start site region 148875	1502 bp upstream
Tssr148876	transcription start site region 148876	630 bp downstream