rs238243378 SNP Detail

Summary

• ID
  rs238243378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128658661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGTTGT AAGATGGCAA
  ACACATCAAT CCTAAAAGTT TTTCGAGTTT TCTCAGGAGG TTCTCAATGA CCTGCCCTCC
  CTCCCCTGAC TATCCTACCT CTAGAGAGAG AACGTGTAGG GTAGATAGCT GTAATATGAG
  AGGTGTATGA AGTATGTTTG AAAACCTTAG GATTTTGTTT GTCCTTTTAA CCTTTGGGAA
  R
  GATCCCAGCT CTCTTGATGT CACCCCCAAC TCCCTTTTTG GGTCTATTTT TGTTATTTCC
  GTGTGTCTGT GTGAGTATAT GATGGATGCA TGCTCTTGGA GGTTAGAAGA GGGTGTTGGA
  TCCCCTGGAG CTGGAGTTAC AGGCAGTTTT GAGCAGCCTG ATGTGGGTGC TGAGAGTAGA
  ATAATTTGGG TCCTGAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382211318	MGP_WTSI_10_128259848	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238243378					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382211318	MGP_WTSI_10_128259848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128658661 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	625 bp distal
Ormdl2	ORM1-like 2 (S. cerevisiae)	1163 bp upstream
Rr402366	regulatory region 402366	970 bp downstream
Rr441331	regulatory region 441331	1212 bp distal
Rr441332	regulatory region 441332	885 bp distal
Rr441333	regulatory region 441333	within coordinates
Rr441334	regulatory region 441334	846 bp distal
Rr441335	regulatory region 441335	528 bp distal
Rr441336	regulatory region 441336	506 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	within coordinates
Tssr96458	transcription start site region 96458	1055 bp downstream
Tssr96459	transcription start site region 96459	1019 bp downstream
Tssr96460	transcription start site region 96460	992 bp downstream
Tssr96461	transcription start site region 96461	879 bp downstream
Tssr99967	transcription start site region 99967	1160 bp upstream