rs238254240 SNP Detail

Summary

• ID
  rs238254240
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122642006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCTAGT GTATAGCAAT
  GCACTCCCTA GAAGCAAGGT GGAAACTGGT TAGGTCACAG CCTCTTCTGG AGGATCAGGT
  GACTGCCTGC GAGGTGGGGG GTGAGAGGGT GGGAGGGATG GAGAGCTGGT GGGTCTCCCT
  CCTAGCTGGA TTCCAGTTCT GTCGTACCTA CAGCAAGGGG CACTGAGAGT AGGAAGGTCA
  W
  GACCTCTCTT AGTTTGTCTG TGATGCTCAC TGGGTTTGGC TTTTGTTCTG TAGTCCCCTC
  CTTCAGGGGC TGGAGGTGCA CCCTACAACA CGGGTTCCCA GTTTTTCCCT CAGGCCATCT
  TCCTCCTTGT CCGGTCCCCT CCTGAAAGAT GTTTGGTGGT TTTTTTTGTT TTGTTTTTCC
  AGAGCTGAGG ACCGAACCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366519197	MGP_WTSI_5_122953952	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238254240					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519197	MGP_WTSI_5_122953952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122642006 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	1718 bp upstream
Cpgi16553	CpG island 16553	885 bp distal
Gm57291	predicted gene, 57291	341 bp downstream
Rr378565	regulatory region 378565	within coordinates
Rr399329	regulatory region 399329	190 bp downstream
Rr619902	regulatory region 619902	1460 bp distal
Rr619903	regulatory region 619903	1744 bp distal
Rr619904	regulatory region 619904	within coordinates
Tssr48701	transcription start site region 48701	1461 bp downstream
Tssr53131	transcription start site region 53131	1798 bp upstream
Tssr53132	transcription start site region 53132	1767 bp upstream
Tssr53133	transcription start site region 53133	1699 bp upstream
Tssr53134	transcription start site region 53134	1665 bp upstream
Tssr53135	transcription start site region 53135	1649 bp upstream
Tssr53136	transcription start site region 53136	1289 bp upstream
Tssr53137	transcription start site region 53137	1201 bp upstream