rs238254483 SNP Detail

Summary

• ID
  rs238254483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34614081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCGGGCG GTGGCCGGGA
  GACCCGAGAC GCGCGGCGGC GGCGGCGGCC AGACAACACC CGGAAGTGCA CCCCGCTGCA
  CTTCCGCCGG CGGCTCGCGC GGGGGCGTGG GGGCGCGCGA GGCCGGGCCG GGCCGGGCCG
  GCGTCCTTCC TTCCGCGGCT GAGGGGGGCC AGCTGGGGAC GTGCGGGGCA GCTCCGGCCC
  R
  GAGTCCCCGC GGTCTCGAGA AGAGAGCGTG CGGAGCTCGT GAAGATGCGG GCGATGTCTT
  TGCGGGATCG CCTCACTTTC TGCCCCGCGA GCCCATTTCT CCTCCCACCA CCCAGTCTGT
  GACACGTGAG ATGGGTGGTC TCTGCTTCTC TCCTTGGGTT CCTAACACAG ATCCCATGAG
  GTCCCCTCCA CCCCCGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss374219998	MGP_WTSI_8_35209981	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238254483					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374219998	MGP_WTSI_8_35209981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34614081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	within coordinates
Leprotl1	leptin receptor overlapping transcript-like 1	mRNA-UTR
Rr661962	regulatory region 661962	1563 bp distal
Rr661963	regulatory region 661963	within coordinates
Rr661964	regulatory region 661964	96 bp proximal
Tssr76861	transcription start site region 76861	1678 bp downstream
Tssr76862	transcription start site region 76862	590 bp downstream
Tssr76863	transcription start site region 76863	560 bp downstream
Tssr76864	transcription start site region 76864	543 bp downstream
Tssr80896	transcription start site region 80896	766 bp upstream
Tssr80897	transcription start site region 80897	340 bp upstream
Tssr80898	transcription start site region 80898	209 bp upstream
Tssr80899	transcription start site region 80899	175 bp upstream
Tssr80900	transcription start site region 80900	159 bp upstream
Tssr80901	transcription start site region 80901	117 bp upstream
Tssr80902	transcription start site region 80902	47 bp downstream
Tssr80903	transcription start site region 80903	91 bp downstream