rs238261788 SNP Detail

Summary

• ID
  rs238261788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56281805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGACCTG AGAAAATGGC
  AGACTGAACT GTACCACTCC CTAAAGCTGG CCCACGTAGT AGAAAGTAAG CCAGTAAGGA
  AGTTATCATA TGTGAATTTC CAGACCAATC TCAGTGTGAT ACAGTGTGAG CTCTCCCTTC
  CTGGTGAAAA CTATGACCTA GCTCGTAGCA AAATGAGAAA GAGGGAAAGT TTAAAATCTC
  R
  GGAGACTCCT CATCCTTAAG GGGAAAAAAT CCCCACAAGT TGAAAAGGTT GATCGAGTCA
  GAGGTTGTGT GTAAGCCCAG TTGCTGTTGC TCAATTGGTC AATTGTGGAC AAGCTGTAGT
  AACTCCAGTA GCGAGTATGA GGGTGTCCAT TTCAGAACTA ACCGCAACTT TGACTGCACA
  CCTTAAGGTG AACCTACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388701977	MGP_WTSI_13_56235353	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238261788					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388701977	MGP_WTSI_13_56235353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56281805 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	619 bp proximal
Macroh2a1	macroH2A.1 histone	within coordinates
Rr480640	regulatory region 480640	1096 bp distal
Rr480641	regulatory region 480641	1 bp proximal
Rr480642	regulatory region 480642	522 bp proximal
Rr480643	regulatory region 480643	1528 bp proximal
Tssr4083	transcription start site region 4083	643 bp downstream
Tssr122739	transcription start site region 122739	1413 bp downstream
Tssr122740	transcription start site region 122740	1435 bp downstream
Tssr122741	transcription start site region 122741	1480 bp downstream
Tssr122742	transcription start site region 122742	1526 bp downstream
Tssr122743	transcription start site region 122743	1637 bp downstream
Tssr122744	transcription start site region 122744	1664 bp downstream
Tssr122745	transcription start site region 122745	1684 bp downstream
Tssr122746	transcription start site region 122746	1792 bp downstream
Tssr122747	transcription start site region 122747	1845 bp downstream
Tssr122748	transcription start site region 122748	1908 bp downstream
Tssr122749	transcription start site region 122749	1956 bp downstream