rs238263293 SNP Detail

Summary

• ID
  rs238263293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135303627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTGAGA CACAGCCAGT
  TAAACACTTT ACAGTGGAAA CTCTTTTTCT TCATGGAGCA AGCCTGCAAA AAATACTACA
  TAAGCTATCA GGGTCAACAG TTAGTTACAG GTGGAAAGTC TCAAAGAAGA AAGTCAATGT
  ACCTTTACCA ACTCGTGTGG AGTTGATGCA GGACTCAGCG TCAGAGCCTG GGGCTCCAAC
  R
  AGCCAGGTTT AGACAATTAC CCTCAATAGA CAATTAAAAT AACCAAATTA ATAGTGAAAT
  GTATTCAATA TGGCCACACT GGAAAGAGGG TCATGGAGAT CTAGTGATTC CTTTCCATGC
  CCTAGTCCTG TGGGTCTCAG CCTTCCTACT GTGGCAACCC TTTGACACAG TTCCTCAAAC
  TGTGGTGACT CCCAACCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351539958	MGP_WTSI_1_137272466	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238263293					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351539958	MGP_WTSI_1_137272466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135303627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	413 bp distal
Rr12587	regulatory region 12587	227 bp distal
Rr28596	regulatory region 28596	226 bp distal
Shisa4	shisa family member 4	652 bp upstream
Tssr13846	transcription start site region 13846	1925 bp upstream
Tssr13847	transcription start site region 13847	1455 bp upstream
Tssr13848	transcription start site region 13848	956 bp upstream
Tssr13849	transcription start site region 13849	943 bp upstream
Tssr13850	transcription start site region 13850	791 bp upstream
Tssr13851	transcription start site region 13851	779 bp upstream
Tssr13852	transcription start site region 13852	661 bp upstream
Tssr13853	transcription start site region 13853	644 bp upstream
Tssr13854	transcription start site region 13854	625 bp upstream
Tssr13855	transcription start site region 13855	612 bp upstream
Tssr13856	transcription start site region 13856	604 bp upstream