rs238263842 SNP Detail

Summary

• ID
  rs238263842
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26301436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGTCCT GCAGAGGATT
  GGAAAAGACA CGGTCATCAC TCATGAGCTG GCTGCGGCGG CAGCAGGCAA CCTGGTGGGG
  CCTCGAGACT TCGTGAGCGT GCGCTGTACC AAGCGCAGAG GTTCCACCTG TGTGCTGGCA
  GGCATGGCCA CACATTTTGG GGAGATGCCG GAGCAGAGTG GTGTCATCAG GTAAAACTTG
  K
  CGGCAGTCTC CAAACTGCAG TGTCATAATC TTGATCCCCA CTTCCAAGCA ACCAATTCTT
  AGCCCCACAC TCAGCTTTAA AAAAAAAAAA GCAATGGCCA GAGTAGCCCC ACTTCCGCAG
  CTAGGTGGTT TATTCTACCC TCCCAGGAAC TTTTCTAAGA ATCCTAATAA TTTTCCAAAG
  CTAGGAGCAG GCCTCTTTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374010850	MGP_WTSI_8_26921880	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238263842					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374010850	MGP_WTSI_8_26921880	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26301436 () rs orientation: forward

Symbol	Name	Function Class
Rr180623	regulatory region 180623	165 bp proximal
Rr189144	regulatory region 189144	565 bp proximal
Star	steroidogenic acute regulatory protein	within coordinates
Tssr76718	transcription start site region 76718	1534 bp downstream
Tssr76719	transcription start site region 76719	1566 bp upstream
Tssr76720	transcription start site region 76720	1628 bp upstream
Tssr76721	transcription start site region 76721	1644 bp upstream
Tssr76722	transcription start site region 76722	1680 bp upstream
Tssr76723	transcription start site region 76723	1958 bp upstream
Tssr80733	transcription start site region 80733	1562 bp downstream
Tssr80734	transcription start site region 80734	1755 bp downstream